3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08741

Details:

PFam ID : PF08741

PFam Domain Description : YwhD family

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 49

Average sequence length: 157.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08741	C8WVF4_ALIAD_15_154	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08741	C8WVF4_ALIAD_15_154	100

Sequence based PCA Plot of the family - PF08741 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=84 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay