3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08736

Details:

PFam ID : PF08736

PFam Domain Description : FERM adjacent (FA)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 133

Average sequence length: 45.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08736	A7SJJ3_NEMVE_274_315	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08736	A7SJJ3_NEMVE_274_315	99.2

Sequence based PCA Plot of the family - PF08736 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=7 Length=17
Motif2 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay