3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08734

Details:

PFam ID : PF08734

PFam Domain Description : GYD domain

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 128

Average sequence length: 89.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08734	Q2LRE7_SYNAS_1_53	68.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08734	Q4FMK6_PELUB_4_98	100

Sequence based PCA Plot of the family - PF08734 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay