3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08731

Details:

PFam ID : PF08731

PFam Domain Description : Transcription factor AFT

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 31

Average sequence length: 90.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08731	C4YCH2_CLAL4_63_96	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08731	Q6FS49_CANGA_15_125	100

Sequence based PCA Plot of the family - PF08731 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay