3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08729

Details:

PFam ID : PF08729

PFam Domain Description : Hpc2-related domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 114

Average sequence length: 52.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08729	E7R832_PICAD_444_649	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08729	D8LBJ9_ECTSI_151_204	95.5

Sequence based PCA Plot of the family - PF08729 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=34 Length=8
Motif2 Start=1 Length=17
Motif3 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay