3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08728

Details:

PFam ID : PF08728

PFam Domain Description : CRT10

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 80

Average sequence length: 281.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08728	E7R832_PICAD_444_649	72.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08728	Q759E8_ASHGO_127_910	100

Sequence based PCA Plot of the family - PF08728 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay