3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08725

Details:

PFam ID : PF08725

PFam Domain Description : Integrin beta cytoplasmic domain

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 99

Average sequence length: 43.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08725	F1P6A8_CANFA_717_741	22.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08725	Q4S9S7_TETNG_789_820	90.8

Sequence based PCA Plot of the family - PF08725 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=6 Length=18
Motif2 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay