3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08722

Details:

PFam ID : PF08722

PFam Domain Description : TnsA endonuclease N terminal

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 230

Average sequence length: 86.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08722	C3JUD8_RHOER_97_170	68.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08722	C3JUD8_RHOER_97_170	98.2

Sequence based PCA Plot of the family - PF08722 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=3 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay