3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08721

Details:

PFam ID : PF08721

PFam Domain Description : TnsA endonuclease C terminal

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 116

Average sequence length: 77.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08721	E6PKG7_9ZZZZ_105_188	54.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08721	E6PKG7_9ZZZZ_105_188	72

Sequence based PCA Plot of the family - PF08721 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=18 Length=8
Motif3 Start=73 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay