3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08719

Details:

PFam ID : PF08719

PFam Domain Description : Domain of unknown function (DUF1768)

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 410

Average sequence length: 150.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08719	E1ZH45_9CHLO_403_607	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08719	E1ZH45_9CHLO_403_607	100

Sequence based PCA Plot of the family - PF08719 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=110 Length=8
Motif2 Start=12 Length=8
Motif3 Start=136 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay