3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08718

Details:

PFam ID : PF08718

PFam Domain Description : Glycolipid transfer protein (GLTP)

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 283

Average sequence length: 138.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08718	B9SJI0_RICCO_34_118	83.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08718	A0C9H6_PARTE_26_198	100

Sequence based PCA Plot of the family - PF08718 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=93 Length=8
Motif4 Start=129 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay