3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08713

Details:

PFam ID : PF08713

PFam Domain Description : DNA alkylation repair enzyme

Number of Sequence in 50% Dataset : 138

Number of Sequence in Full Dataset : 849

Average sequence length: 186.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08713	D8LGF0_ECTSI_49_148	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08713	E4T0N6_PALPW_7_216	99.6

Sequence based PCA Plot of the family - PF08713 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=20 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay