3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08709

Details:

PFam ID : PF08709

PFam Domain Description : Inositol 1,4,5-trisphosphate/ryanodine receptor

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 134

Average sequence length: 193.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08709	A8JF83_CHLRE_3_219	94.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08709	Q22C42_TETTH_4_299	96.9

Sequence based PCA Plot of the family - PF08709 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=14 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay