3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08705

Details:

PFam ID : PF08705

PFam Domain Description : Gag protein p6

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 3630

Average sequence length: 36.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08705	E2GBL8_9HIV1_433_451	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08705	Q5QAI4_9HIV1_101_117	99.3

Sequence based PCA Plot of the family - PF08705 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay