3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08704

Details:

PFam ID : PF08704

PFam Domain Description : tRNA methyltransferase complex GCD14 subunit

Number of Sequence in 50% Dataset : 118

Number of Sequence in Full Dataset : 509

Average sequence length: 232.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08704	A0JLR9_HUMAN_90_173	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08704	Q23UC8_TETTH_330_424	99.6

Sequence based PCA Plot of the family - PF08704 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=98 Length=8
Motif2 Start=9 Length=8
Motif3 Start=80 Length=11
Motif4 Start=375 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay