3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08701

Details:

PFam ID : PF08701

PFam Domain Description : GNL3L/Grn1 putative GTPase

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 143

Average sequence length: 77.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08701	A4HY46_LEIIN_15_104	30.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08701	A4HY46_LEIIN_15_104	100

Sequence based PCA Plot of the family - PF08701 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=8 Length=17
Motif3 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay