3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08700

Details:

PFam ID : PF08700

PFam Domain Description : Vps51/Vps67

Number of Sequence in 50% Dataset : 93

Number of Sequence in Full Dataset : 361

Average sequence length: 83.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08700	B0EQJ6_ENTDI_73_195	59.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08700	B0EQJ6_ENTDI_73_195	100

Sequence based PCA Plot of the family - PF08700 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay