3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08699

Details:

PFam ID : PF08699

PFam Domain Description : Domain of unknown function (DUF1785)

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 276

Average sequence length: 53.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08699	C1DZY0_MICSR_207_262	30.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08699	E3S7L8_PYRTT_247_303	99.2

Sequence based PCA Plot of the family - PF08699 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=18
Motif2 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay