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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08698
Details:

PFam ID : PF08698

PFam Domain Description : Fcf2 pre-rRNA processing

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 152

Average sequence length: 97.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08698D7KPY9_ARALL_2_3744.4
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08698F0VAJ4_NEOCA_316_438100
Sequence based PCA Plot of the family - PF08698 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=18
Motif2 Start=20 Length=8
Motif3 Start=11 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay