3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08696

Details:

PFam ID : PF08696

PFam Domain Description : DNA replication factor Dna2

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 142

Average sequence length: 193.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08696	C4PZG0_SCHMA_298_401	98.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08696	E9BW99_9EUKA_357_607	100

Sequence based PCA Plot of the family - PF08696 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=223 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay