3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08694

Details:

PFam ID : PF08694

PFam Domain Description : Ubiquitin-fold modifier-conjugating enzyme 1

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 56

Average sequence length: 149.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08694	A3C3E1_ORYSJ_6_72	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08694	A7T566_NEMVE_4_113	96.3

Sequence based PCA Plot of the family - PF08694 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=11
Motif2 Start=44 Length=8
Motif3 Start=18 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay