3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08692

Details:

PFam ID : PF08692

PFam Domain Description : Mitochondrial protein Pet20

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 31

Average sequence length: 95.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08692	A7TMR3_VANPO_66_209	86.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08692	A7TMR3_VANPO_66_209	100

Sequence based PCA Plot of the family - PF08692 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=29 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay