3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08691

Details:

PFam ID : PF08691

PFam Domain Description : DNA repair proteins Nse5 and Nse6

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 19

Average sequence length: 402.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08691	C5DLK2_LACTC_150_411	11.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08691	E7NLB7_YEASO_1_325	38

Sequence based PCA Plot of the family - PF08691 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay