3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08690

Details:

PFam ID : PF08690

PFam Domain Description : GET complex subunit GET2

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 55

Average sequence length: 233.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08690	A2VBP7_DEKBR_2_346	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08690	GET2_LODEL_8_355	100

Sequence based PCA Plot of the family - PF08690 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=20 Length=27
Motif2 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay