3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08689

Details:

PFam ID : PF08689

PFam Domain Description : Mediator complex subunit Med5

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 74

Average sequence length: 672.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08689	MED5_ASHGO_1_1094	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08689	MED5_DEBHA_1_987	100

Sequence based PCA Plot of the family - PF08689 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=804 Length=8
Motif3 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay