3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08688

Details:

PFam ID : PF08688

PFam Domain Description : Apx/Shroom domain ASD1

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 37

Average sequence length: 147.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08688	A7E301_BOVIN_108_202	31.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08688	Q4RIS7_TETNG_1750_1973	100

Sequence based PCA Plot of the family - PF08688 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay