3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08687

Details:

PFam ID : PF08687

PFam Domain Description : Apx/Shroom domain ASD2

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 65

Average sequence length: 237.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08687	Q4RAI5_TETNG_1_35	30

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08687	D3Z3D5_MOUSE_517_715	100

Sequence based PCA Plot of the family - PF08687 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=151 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay