3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08685

Details:

PFam ID : PF08685

PFam Domain Description : GON domain

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 74

Average sequence length: 152.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08685	A7T9J5_NEMVE_44_245	74.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08685	A7T9J5_NEMVE_44_245	100

Sequence based PCA Plot of the family - PF08685 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=2 Length=8
Motif3 Start=31 Length=8
Motif4 Start=183 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay