3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08683

Details:

PFam ID : PF08683

PFam Domain Description : Microtubule-binding calmodulin-regulated spectrin-associated

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 59

Average sequence length: 119.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08683	A2E1D2_TRIVA_728_844	4.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08683	C1MII2_MICPC_882_1015	100

Sequence based PCA Plot of the family - PF08683 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=78 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay