3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08677

Details:

PFam ID : PF08677

PFam Domain Description : GP11 baseplate wedge protein

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 23

Average sequence length: 206.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08677	Q6WHF8_BPKV4_8_234	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08677	Q6WHF8_BPKV4_8_234	100

Sequence based PCA Plot of the family - PF08677 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=57 Length=8
Motif3 Start=219 Length=8
Motif4 Start=202 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay