3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08676

Details:

PFam ID : PF08676

PFam Domain Description : MutL C terminal dimerisation domain

Number of Sequence in 50% Dataset : 329

Number of Sequence in Full Dataset : 1250

Average sequence length: 143.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08676	E9HMS2_DAPPU_440_527	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08676	B7PAH6_IXOSC_34_112	100

Sequence based PCA Plot of the family - PF08676 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=17
Motif2 Start=79 Length=8
Motif3 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay