3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08672

Details:

PFam ID : PF08672

PFam Domain Description : Anaphase promoting complex (APC) subunit 2

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 80

Average sequence length: 57.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08672	A5AKI4_VITVI_747_791	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08672	F0YL58_9STRA_624_680	100

Sequence based PCA Plot of the family - PF08672 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=16 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay