3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08669

Details:

PFam ID : PF08669

PFam Domain Description : Glycine cleavage T-protein C-terminal barrel domain

Number of Sequence in 50% Dataset : 207

Number of Sequence in Full Dataset : 2474

Average sequence length: 94.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08669	B5KUI2_HELAN_3_60	55.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08669	B5KUI2_HELAN_3_60	99.1

Sequence based PCA Plot of the family - PF08669 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=21 Length=8
Motif3 Start=1 Length=8
Motif4 Start=49 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay