3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08668

Details:

PFam ID : PF08668

PFam Domain Description : HDOD domain

Number of Sequence in 50% Dataset : 675

Number of Sequence in Full Dataset : 1405

Average sequence length: 177.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08668	A4BD34_9GAMM_11_158	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08668	D5HCM1_SALRM_20_231	100

Sequence based PCA Plot of the family - PF08668 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=101 Length=8
Motif2 Start=62 Length=8
Motif3 Start=38 Length=8
Motif4 Start=126 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay