3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08662

Details:

PFam ID : PF08662

PFam Domain Description : Eukaryotic translation initiation factor eIF2A

Number of Sequence in 50% Dataset : 127

Number of Sequence in Full Dataset : 375

Average sequence length: 172.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08662	Q757Z3_ASHGO_1_116	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08662	STRAP_DICDI_58_220	100

Sequence based PCA Plot of the family - PF08662 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=23 Length=18
Motif3 Start=108 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay