3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08660

Details:

PFam ID : PF08660

PFam Domain Description : Oligosaccharide biosynthesis protein Alg14 like

Number of Sequence in 50% Dataset : 89

Number of Sequence in Full Dataset : 288

Average sequence length: 154.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08660	A9X944_PIG_1_50	84.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08660	Q0UTG6_PHANO_50_288	100

Sequence based PCA Plot of the family - PF08660 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=148 Length=8
Motif2 Start=112 Length=8
Motif3 Start=135 Length=8
Motif4 Start=1 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay