3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08659

Details:

PFam ID : PF08659

PFam Domain Description : KR domain

Number of Sequence in 50% Dataset : 534

Number of Sequence in Full Dataset : 3375

Average sequence length: 179.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08659	C6WJZ4_ACTMD_1749_1834	88.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08659	Q5XF87_MAGO7_2141_2219	100

Sequence based PCA Plot of the family - PF08659 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=3 Length=11
Motif2 Start=130 Length=14
Motif3 Start=192 Length=20
Motif4 Start=225 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay