3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08656

Details:

PFam ID : PF08656

PFam Domain Description : DASH complex subunit Dad3

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 49

Average sequence length: 78.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08656	D8PV03_SCHCM_13_68	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08656	A3LXY6_PICST_13_108	100

Sequence based PCA Plot of the family - PF08656 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=47 Length=8
Motif2 Start=5 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay