3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08655

Details:

PFam ID : PF08655

PFam Domain Description : DASH complex subunit Ask1

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 45

Average sequence length: 62.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08655	E2M6Z7_MONPE_1_33	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08655	E7QHA1_YEASZ_10_75	97.7

Sequence based PCA Plot of the family - PF08655 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=21 Length=8
Motif3 Start=12 Length=8
Motif4 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay