3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08647

Details:

PFam ID : PF08647

PFam Domain Description : BRE1 E3 ubiquitin ligase

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 69

Average sequence length: 95.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08647	B6K254_SCHJY_435_535	61.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08647	B6K254_SCHJY_435_535	77

Sequence based PCA Plot of the family - PF08647 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=41 Length=8
Motif2 Start=32 Length=8
Motif3 Start=23 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay