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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08644
Details:

PFam ID : PF08644

PFam Domain Description : FACT complex subunit (SPT16/CDC68)

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 114

Average sequence length: 145.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08644B4ITX8_DROYA_518_56786.2
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08644F0V8K2_NEOCA_294_468100
Sequence based PCA Plot of the family - PF08644 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=41 Length=8
Motif2 Start=66 Length=8
Motif3 Start=13 Length=11
Motif4 Start=143 Length=11
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay