3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08643

Details:

PFam ID : PF08643

PFam Domain Description : Fungal family of unknown function (DUF1776)

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 59

Average sequence length: 267.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08643	E7R1F3_PICAD_95_269	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08643	C7YI45_NECH7_122_431	98.2

Sequence based PCA Plot of the family - PF08643 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=175 Length=8
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay