3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08642 Details: PFam ID : PF08642 PFam Domain Description : Histone deacetylation protein Rxt3 Number of Sequence in 50% Dataset : 23 Number of Sequence in Full Dataset : 85 Average sequence length: 111.3 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF08642E6RC81_CRYGW_785_89986.3 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF08642E7R189_PICAD_310_447100 Sequence based PCA Plot of the family - PF08642 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=19 Length=14Motif2 Start=10 Length=8Motif3 Start=1 Length=8Motif4 Start=130 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF08642
PFam Domain Description : Histone deacetylation protein Rxt3
Number of Sequence in 50% Dataset : 23
Number of Sequence in Full Dataset : 85
Average sequence length: 111.3
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER