3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08641

Details:

PFam ID : PF08641

PFam Domain Description : Kinetochore protein Mis14 like

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 75

Average sequence length: 140.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08641	B6GXT6_PENCW_66_196	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08641	A5E5Z2_LODEL_68_214	98.6

Sequence based PCA Plot of the family - PF08641 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay