3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08639

Details:

PFam ID : PF08639

PFam Domain Description : DNA replication regulator SLD3

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 74

Average sequence length: 435.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08639	F2QMA6_PICPA_394_582	77.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08639	SLD3_SCHPO_283_645	98.6

Sequence based PCA Plot of the family - PF08639 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=465 Length=8
Motif2 Start=20 Length=8
Motif3 Start=212 Length=8
Motif4 Start=258 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay