3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08638

Details:

PFam ID : PF08638

PFam Domain Description : Mediator complex subunit MED14

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 120

Average sequence length: 186.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08638	A4S084_OSTLU_250_463	15.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08638	A4S084_OSTLU_250_463	100

Sequence based PCA Plot of the family - PF08638 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=109 Length=8
Motif3 Start=2 Length=8
Motif4 Start=177 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay