3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08637

Details:

PFam ID : PF08637

PFam Domain Description : ATP synthase regulation protein NCA2

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 109

Average sequence length: 260.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08637	C7IZQ3_ORYSJ_17_225	76.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08637	NCA2_DICDI_589_916	100

Sequence based PCA Plot of the family - PF08637 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=286 Length=8
Motif2 Start=135 Length=8
Motif3 Start=305 Length=8
Motif4 Start=75 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay