3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08634

Details:

PFam ID : PF08634

PFam Domain Description : Mitochondrial protein Pet127

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 64

Average sequence length: 265.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08634	B5VRS0_YEAS6_1_153	72.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08634	Q6CET0_YARLI_322_653	100

Sequence based PCA Plot of the family - PF08634 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=67 Length=8
Motif2 Start=78 Length=8
Motif3 Start=1 Length=8
Motif4 Start=40 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay