3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08630

Details:

PFam ID : PF08630

PFam Domain Description : Dfp1/Him1, central region

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 60

Average sequence length: 123.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08630	Q4PHM4_USTMA_328_454	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08630	Q4PHM4_USTMA_328_454	100

Sequence based PCA Plot of the family - PF08630 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=12 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay