3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08626

Details:

PFam ID : PF08626

PFam Domain Description : Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit

Number of Sequence in 50% Dataset : 132

Number of Sequence in Full Dataset : 230

Average sequence length: 664.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08626	E2LRG4_MONPE_5_153	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08626	D8QW23_SELML_474_994	99.5

Sequence based PCA Plot of the family - PF08626 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=280 Length=8
Motif2 Start=268 Length=8
Motif3 Start=203 Length=8
Motif4 Start=253 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay